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unmethylated gpppg  (New England Biolabs)


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    Structured Review

    New England Biolabs unmethylated gpppg
    Unmethylated Gpppg, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 95/100, based on 186 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/g+5+ppp+5/G(5)ppp(5)G+RNA+Cap+Struc+Analog/pm42103131-88-26-28
    Average 95 stars, based on 186 article reviews
    unmethylated gpppg - by Bioz Stars, 2026-09
    95/100 stars

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    Related Articles

    other:

    Article Title: Development and validation of a generic methyltransferase enzymatic assay based on an SAH riboswitch.
    Article Snippet: G(5′)ppp(5′)A RNA Cap Structure Analog was from New England BioLabs Inc. (Cat. #S1406L). ssRNA Oligomer (5′-GUUGCCUGUUCGUGUUGGACUUGCCUGU-3′) was from IDT.

    Article Title: Development and validation of a generic methyltransferase enzymatic assay based on an SAH riboswitch
    Article Snippet: G(5′)ppp(5′)A RNA Cap Structure Analog was from New England BioLabs Inc. (Cat. #S1406L). ssRNA Oligomer (5′-GUUGCCUGUUCGUGUUGGACUUGCCUGU-3′) was from IDT.

    Article Title: The MYCN 5′ UTR as a therapeutic target in neuroblastoma
    Article Snippet: G(5′)ppp(5′)A RNA Cap Structure Analog , New England Biolabs , Cat# S1406S.

    In Vitro:

    Article Title: DDX3 regulates the cap-independent translation of the Japanese encephalitis virus via its interactions with PABP1 and the untranslated regions of the viral genome
    Article Snippet: The JEV cDNA clones for RNA in vitro transcription were generated by cleavage linearization with restriction endonuclease Bsu36I (NEB). .. The full-length viral RNA was transcribed in vitro from the linearized JEV cDNA templates using the HiScribe T7 Quick High Yield RNA Synthesis Kit (NEB), and different 5′ cap structures of the viral genome were obtained by the addition of m 7 G(5′)ppp(5′)A cap analog or G(5′)ppp(5′)A cap analog (NEB). .. 2μg of transcript RNA was subsequently transfected into host cells seeded in a six-well plate with Lipofectamine MessengerMAX transfection reagent (Thermo Fisher Scientific) according to the manufacturer’s instructions.

    Modification:

    Article Title: Varicella zoster virus (VZV) vaccine
    Article Snippet: 5′-capping of polynucleotides may be completed concomitantly during the in vitro-transcription reaction using the following chemical RNA cap analogs to generate the 5′-guanosine cap structure according to manufacturer protocols: 3′-O-Me-m7G(5′)ppp(5′) G [the ARCA cap];G(5′)ppp(5′)A; G(5′)ppp(5′)G; m7G(5′)ppp(5′)A; m7G(5′)ppp(5′)G (New England BioLabs, Ipswich, MA). .. 5′-capping of modified RNA may be completed post-transcriptionally using a Vaccinia Virus Capping Enzyme to generate the “Cap 0” structure: m7G(5′)ppp(5′)G (New England BioLabs, Ipswich, MA). .. 5′-capping of polynucleotides may be completed concomitantly during the in vitro-transcription reaction using the following chemical RNA cap analogs to generate the 5′-guanosine cap structure according to manufacturer protocols: 3′-O-Me-m7G(5′)ppp(5′) G [the ARCA cap];G(5′)ppp(5′)A; G(5′)ppp(5′)G; m7G(5′)ppp(5′)A; m7G(5′)ppp(5′)G (New England BioLabs, Ipswich, MA).

    Virus:

    Article Title: Varicella zoster virus (VZV) vaccine
    Article Snippet: 5′-capping of polynucleotides may be completed concomitantly during the in vitro-transcription reaction using the following chemical RNA cap analogs to generate the 5′-guanosine cap structure according to manufacturer protocols: 3′-O-Me-m7G(5′)ppp(5′) G [the ARCA cap];G(5′)ppp(5′)A; G(5′)ppp(5′)G; m7G(5′)ppp(5′)A; m7G(5′)ppp(5′)G (New England BioLabs, Ipswich, MA). .. 5′-capping of modified RNA may be completed post-transcriptionally using a Vaccinia Virus Capping Enzyme to generate the “Cap 0” structure: m7G(5′)ppp(5′)G (New England BioLabs, Ipswich, MA). .. 5′-capping of polynucleotides may be completed concomitantly during the in vitro-transcription reaction using the following chemical RNA cap analogs to generate the 5′-guanosine cap structure according to manufacturer protocols: 3′-O-Me-m7G(5′)ppp(5′) G [the ARCA cap];G(5′)ppp(5′)A; G(5′)ppp(5′)G; m7G(5′)ppp(5′)A; m7G(5′)ppp(5′)G (New England BioLabs, Ipswich, MA).

    Synthesized:

    Article Title: Dissecting the mechanism of NOP56 GGCCUG repeat-associated non-AUG translation using cell-free translation systems.
    Article Snippet: 5' m7G-capped mRNAs were synthesized Jo urn al Pr -pr oo f 10 using mMESSAGE mMACHINETM T7 Transcription Kit (Thermo Fisher) and subsequently polyadenylated with E. coli poly(A) polymerase (NEB). .. 5' A-capped mRNAs were synthesized using HiScribe® T7 High Yield RNA Synthesis Kit (NEB) and G (5') ppp (5') A RNA Cap structure Analog (NEB). ..

    Article Title: Dissecting the mechanism of NOP56 GGCCUG repeat-associated non-AUG translation using cell-free translation systems
    Article Snippet: 5′ m 7 G-capped mRNAs were synthesized using mMESSAGE mMACHINE T7 Transcription Kit (Thermo Fisher) and subsequently polyadenylated with E . coli poly(A) polymerase (NEB). .. 5′ A-capped mRNAs were synthesized using HiScribe T7 High Yield RNA Synthesis Kit (NEB) and G (5′) ppp (5′) A RNA Cap structure Analog (NEB). ..

    Activity Assay:

    Article Title: Development of Pan-Anti-SARS-CoV-2 Agents through Allosteric Inhibition of nsp14/nsp10 Complex.
    Article Snippet: SARS-CoV-2 nsp14 functions both as an exoribonuclease (ExoN) together with its critical cofactor nsp10 and as an S-adenosyl methionine-dependent (guanine-N7) methyltransferase (MTase), which makes it an attractive target for the development of pan-anti-SARS-CoV-2 drugs.. Herein, we screened a panel of compounds (and drugs) and found that certain compounds, especially Bi(III)-based compounds, could allosterically inhibit both MTase and ExoN activities of nsp14 potently.. We further demonstrated that Bi(III) binds to both nsp14 and nsp10, resulting in the release of Zn(II) ions from the enzymes as well as alternation of protein quaternary structures.



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    Image Search Results


    (A) A-cap / stemloop IRES reporter RNA carrying the negative control “scramble 1” sequence was mixed into a polysome lysate made from HEK293T cells for five minutes on ice and loaded on a sucrose gradient. (B) The sucrose gradient was fractionated and cDNA was prepared from groups of fractions as shown (numbered 1 -6). qRT-PCR was performed to quantify the exogenous “scramble 1” RNA across the fractions, as compared to endogenous Gapdh mRNA. The “scramble 1” transcript migrated into polysomal fractions 4-6, even though it is not translated .

    Journal: bioRxiv

    Article Title: Evaluating the reliability of tools for mRNA annotation and IRES studies

    doi: 10.64898/2026.03.29.707813

    Figure Lengend Snippet: (A) A-cap / stemloop IRES reporter RNA carrying the negative control “scramble 1” sequence was mixed into a polysome lysate made from HEK293T cells for five minutes on ice and loaded on a sucrose gradient. (B) The sucrose gradient was fractionated and cDNA was prepared from groups of fractions as shown (numbered 1 -6). qRT-PCR was performed to quantify the exogenous “scramble 1” RNA across the fractions, as compared to endogenous Gapdh mRNA. The “scramble 1” transcript migrated into polysomal fractions 4-6, even though it is not translated .

    Article Snippet: The ARCA m 7 G-cap analog (New England Biolabs; S1411) was used at a 4:1 ratio to GFP for transcription of T7-nluc constructs, while an A-cap analog (New England Biolabs S1406), was used to generate T7HP-nluc IRES reporter RNAs.

    Techniques: Negative Control, Sequencing, Quantitative RT-PCR